St. Petersburg Coastal and Marine Science Center
Poore, R.Z. and Kuffner, I.B., 2010, St. Petersburg Coastal and Marine Science Center Coral Reef Research: U.S. Geological Survey Fact Sheet 2010–3103, 2 p.
Gray, M.A., Pratte, Z.A., and Kellogg, C.A., 2012, Comparison of DNA preservation methods for environmental bacterial-community samples: FEMS Microbiology Ecology 83: 468-477.
Kellogg, C.A., Piceno, Y.M., Tom, L.M., DeSantis, T.Z., Zawada, D.G., and Andersen, G.L., 2012, PhyloChip™ microarray comparison of sampling methods used for coral microbial ecology: Journal of Microbiological Methods 88: 103-109.
Kellogg, C.A., and Zawada, D.G. 2010, Coral Paparazzi—Looking for a Quick Way to Spot Evidence of Coral Disease: Sound Waves, v. FY2011, p. 5-6.
Olson, J.B., and Kellogg C.A. 2010, Microbial ecology of corals, sponges, and algae in mesophotic coral environments: FEMS Microbiology Ecology 73: 17-30.
Kellogg, C.A., and Zawada, D.G., 2009, Applying new methods to diagnose coral diseases: U.S. Geological Survey Fact Sheet 2009-3113, 2 p.
Galkiewicz, J.P., and Kellogg C.A. 2008, Cross-kingdom amplification using bacterial-specific primers: complications for coral microbial ecology: Applied and Environmental Microbiology 74 (24): 7828-7831.
Kristen K.M. Hart, Ikuko Fujisaki, and Autumn R. Sartain, 2012, Chapter 5: Use of Dry Tortugas National Park by threatened and endangeredmarine turtles, in Implementing the Dry Tortugas National Park Research Natural Area Science Plan – The 5-Year Report, National Park Service and the Florida Fish and Wildlife Conservation Commission, Tallahassee, Florida, 80 pp. (8.8 MB PDF)
Hart K.M., Sartain A.R., Fujisaki I., Pratt H.L. J.r, Morley D., Feeley M.W., 2012, Home range, habitat use, and migrations of hawksbill turtles tracked from Dry Tortugas National Park, Florida, USA: Marine Ecology Progress Series, 457:193-207.
Zawada, D.G., 2011, Reef Topographic Complexity, in Hopley, D. (ed.), Encyclopedia of Modern Coral Reefs: Structure, Form, and Process, 902-906.
Hart, K.M., 2010, Use of protected areas by threatened and endangered marine turtles in the Dry Tortugas Pg:12-13, In: Hallac, D and J. Hunt, editors. Implementing the Dry Tortugas National Park Research Natural Areas Science Plan: the 3-year report. South Florida Natural Resources Center, Everglades and Dry Tortugas National Parks, Homestead, FL, and the Florida Fish and Wildlife Conservation Commission, Tallahassee, FL. 37 pp.
Hart K.M., Zawada D.G., Fujisaki I., Lidz B.H., 2010, Inter-nesting habitat-use patterns of loggerhead sea turtles: enhancing satellite tracking with benthic mapping [3.3 MB PDF]: Aquat. Biol. 11:77-90.
Zawada, D.G., and Hart, K.M., 2010, Detailed seafloor habitat mapping to enhance marine-resource management: U.S. Geological Survey Fact Sheet 2010–3090, 2 p.
Zawada, D.G. and Brock, J.C., 200, A multiscale analysis of coral reef topographic complexity using lidar-derived bathymetry: Journal of Coastal Research, SI(53), 6–15. (3.6 MB PDF)
Carnahan, E.A., Hoare, A.M., Hallock, P., Lidz, B.H., and Reich, C.D., 2008, Distribution of heavy metals and foraminiferal assemblages in sediments in Biscayne Bay, Florida, USA: Journal of Coastal Research, v. 24, no. 1, p. 159-169.
Hart, K.M. 2008, Sea Turtles in the Dry Tortugas: Tracking Movements of Endangered Species in Florida's Coral-Reef Habitats: USGS Soundwaves 111:1-3.
Hart, K.M. 2008, Tracking sea turtles in the Everglades [3.9 MB PDF]: United States Fish and Wildlife Service Endangered Species Bulletin 33(3):26-29
Shinn, E.A., Ogden, J.C., Lidz, B.H., and Keller, B., 2008, Shifting Baselines of the Florida Keys National Marine Sanctuary: Published in cooperation with the University of South Florida St. Petersburg, Florida Institute of Oceanography, U.S. Geological Survey, Florida Keys Marine Lab, and National Oceanic and Atmospheric Administration Office of National Marine Sanctuaries; available from co-authors as a brochure, and online.
Zawada, D.G., Thompson, P.R., and Butcher, J., 2008, A new towed platform for the unobtrusive surveying of benthic habitats and organisms: Revista de Biologia Tropical – International Journal of Tropical Biology and Conservation, v. 56, supplement 1, p. 51-63.
Hickey, T. D., C. D. Reich, K. L. DeLong, R. Z. Poore, and J. C. Brock. 2012. Holocene core logs and site methods for modern reef and head-coral cores: Dry Tortugas National Park, Florida. U.S. Geological Survey Open-File Report 2012-1095, 34 p.
Flannery, J.A., and Poore, R.Z. 2010, Corals as Climate Recorders: U.S. Geological Survey Fact Sheet 2010-3085, 2 p.
Reich, C.D., Hickey, T.D., DeLong, K.L., Poore, R.Z., and Brock, J.C., 2009, Holocene core logs and site statistics for modern patch-reef cores—Biscayne National Park, Florida: U.S. Geological Survey Open-File Report 2009–1246, 26 p.
Brock, J.C., Palaseanu-Lovejoy, M., Wright, C.W., and Nayegandhi, A., 2008, Patch-reef morphology as a proxy for Holocene sea-level variability: Coral Reefs, doi: 10.1007/s00338-008-0370-y.
DeLong, K.L., Quinn, T.M., Taylor, F.W., Lin, K., and Shen, C-C., 2008, Inter-Decadal to Multi-Decadal Sea Surface Temperature Variability in the Southwest Tropical Pacific Since AD 1648: Eos Trans. AGU, 89(53), Fall Meet. Suppl., Abstract PP21D-03.
Hine, A. C., et al, 2008, Coral Reefs, Present and Past, on the West Florida Shelf and Platform Margin, in: Reigl, B. and Dodge, R., ed., Coral Reefs of the USA, Netherlands, Springer, p. 127-173.
Lidz, B.H., Brock, J.C., and Nagle, D.B., 2008, Utility of shallow-water ATRIS images in defining biogeologic processes and self-similarity in skeletal Scleractinia, Florida reefs: Journal of Coastal Research, v. 25, no. 5, p. 1320-1338.
Maupin, C.R., Quinn, T.M., and Halley, R.B., 2008, Extracting a climate signal from the skeletal geochemistry of the Caribbean coral Siderastrea siderea: Geochemistry, Geophysics, and Geosystems, v. 9., doi:10.1029/2008GC002106, 13p.
Maupin, C.R., Quinn, T.M., Poore, R.Z., Lin, K., and Shen, C.C., 2008, Inter-Colony Fidelity of Sr/Ca Variability in the Massive Caribbean Coral Siderastrea siderea: a Sub-Fossil Example: Eos Trans. AGU, 89(53), Fall Meet. Suppl., Abstract PP31A-1469.
Kuffner, I.B., P.L. Jokiel, K.S. Rodgers, A.J. Andersson, and F.T. Mackenzie. 2012. An apparent "vital effect" of calcification rate on the Sr/Ca temperature proxy in the reef coral Montipora capitata. Geochemistry Geophysics Geosystems 13:Q08004, doi:08010.01029/02012GC004128.
Kuffner, I.B. and T.D. Hickey. 2012. Calcification over space and time in the subtropical Florida Keys, U.S.A. 12th International Coral Reef Symposium, Cairns, Australia. Abstract, p. 167.
Kuffner, I.B., V. J. Paul, R. Ritson-Williams, T. D. Hickey, and L. J. Walters. 2012. Chapter 8: 'Baseline surveys to detect trophic changes in shallow hard-bottom communities induced by the Dry Tortugas National Park Research Natural Area.' In: Implimenting the Dry Tortugas National Park Research Natural Area Science Plan; the 5-Year report. National Park Service and Florida Fish and Wildlife Conservation Commission. Pages 42-45. (9 MB PDF)
Kuffner, I.B., T.D. Hickey, V.J. Paul, J.M. Morrison, L.J. Walters, K.R. Grablow, T.Turner, and E.R. Parish. 2011. Half-dead colonies of Montastraea annularis release viable gametes on a degraded reef in the US Virgin Islands. Bulletin of Marine Science 87:855-856.
Cimitile, M., and Kuffner, I.B., 2010, Coral Calcification Rates in South Florida During Times of Changing Ocean Conditions: Sound Waves, v. FY2011, p. 4-5.
Kuffner, I.B., 2010, Coral calcification in a changing ocean: U.S. Geological Survey Fact Sheet 2010–3098, 2 p.
Andersson, A.J., Kuffner, I.B., Mackenzie, F.T., Jokiel, P.L., Rodgers, K.S., and Tan, A., 2009, Net loss of CaCO3 from a subtropical calcifying community due seawater acidification: mesocosm-scale experimental evidence [2 MB PDF]: Biogeosciences, v. 6, p. 1811-1823.
Jokiel, P.L., Rodgers, K.S., Kuffner, I.B., Andersson, A.J., Mackenzie, F.T., and Cox, E.F., 2008, Ocean acidification and calcifying reef organisms: A mesocosm investigation: Coral Reefs, v. 27, p. 473-483, doi: 10.1007/s00338-00008-00380-00339.
Kuffner, I.B., Andersson, A.J., Jokiel, P.L., Rodgers, K.S., and Mackenzie, F.T., 2008, Decreased abundance of crustose coralline algae due to ocean acidification: Nature Geoscience, v. 1, p. 114-117,
McGillis, W.R., Langdon, C., Loose, B., Yates, K.K. and Corredor, J. 2011, Productivity of a coral reef using boundary layer and enclosure methods: Geophysical Research Letters 38: L03611, doi:10.1029/2010GL046179L03611, doi:10.1029/2010GL046179.
Yates, K.K. and Moyer, R.P. 2010, Corals Effects of Ocean Acidification and Sea-Level Rise on Coral Reefs: U.S. Geological Survey Fact Sheet 2010-3091, 2 p.
DuFore, C.M. And Yates, K.K. 2009, Spectrophotometric determination of the pH of surface seawater at in-situ conditions using the indicator dye thymol blue: Ocean Carbon and Biogeochemistry Ocean Acidification Short Course, November 2-13, Syllabus.
DuFore, C.M. And Yates, K.K. 2009, Spectrophotometric determination of total alkalinity in seawater using the indicator dye bromocresol purple: Ocean Carbon and Biogeochemistry Ocean Acidification Short Course, November 2-13, Syllabus.
Kleypas, J.A. And Yates, K.K. 2009, Coral reefs and ocean acidification [1 MB PDF]: Oceanography 22(4):108-177.
Yates, K.K. 2009, CO2SYS practice exercise: ocean acidification perturbation experiments: Ocean Carbon and Biogeochemistry Ocean Acidification Short Course, November 2-13, Syllabus.
Yates, K.K., Dufore, C., Smiley, N., Jackson, C., and Halley, R.B. 200,. Diurnal variation of oxygen and carbonate system parameters in Tampa Bay and Florida Bay [960 KB PDF]: Marine Chemistry 104:110-124.
Yates, K. K. and Halley, R. B., 2006, CO32- concentration and pCO2 thresholds for calcification and dissolution on the Molokai reef flat, Hawaii [3.9 MB PDF]: Biogeosciences, 3, 357-369, 2006.
Yates, K.K. and Halley, R.B. 2006, Diurnal variation in rates of calcification and carbonate sediment dissolution in Florida Bay [784 KB PDF]: Estuaries and Coasts 29:24-39.
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